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Why does a Markbook sync with Reports show overridden grades?

The reason this occurs is that marking of the Outcomes triggers Reports to automatically generate an average grade as the 'Overall' score. 
Because you have a Grade calculation synchronising from Markbook to the Overall Assessment mark, you will find the:
  • Markbook Grade OUTSIDE the brackets; and
  • Reports calculated Overall INSIDE the brackets. 
In most cases this will appear as the 'same' grade, however, in some edge cases, the grades may not be the same.
The synchronisation of the Markbook column is required to generate a more accurate Grade based on the various columns used to calculate within markbook. 

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